https://smokelyze.org/resrc/ Recent content in Resrcs on Smokelyze Hugo en-US https://smokelyze.org/resrc/announcements/ Mon, 01 Jan 0001 00:00:00 +0000 https://smokelyze.org/resrc/announcements/ <link rel="stylesheet" href="https://smokelyze.org/css/board.css"> <link rel="stylesheet" href="https://smokelyze.org/css/map.css"> <link rel="stylesheet" href="https://smokelyze.org/css/data.css"> <h1 style="text-align: center;"> Announcements & Updates </h1> <div style="display: flex; gap: 1rem; margin-bottom: 2rem;"> <button class="reply-btn-submit" id="BoardBtnWrite" style="display: none;">+ Write Announcement</button> <button class="reply-btn-submit" id="BoardBtnEmail" style="display: none;">+ Write Bulk Email</button> </div> <hr> <div id="BoardPagination" class="datadb-pagination"> <button id="BoardBtnPrev" class="datadb-page-btn" style="visibility: hidden;">&lt;</button> <span id="BoardPageInfo" style="visibility: hidden;"></span> <button id="BoardBtnNext" class="datadb-page-btn" style="visibility: hidden;">&gt;</button> </div> <div class="board-list" id="BoardList"></div> <!-- Board Modal (Reusing MapPost Style) --> <div class="MapPost-modal-overlay" id="BoardModalOverlay" style="display:none;"> <div class="MapPost-modal"> <div class="MapPost-modal-header"> <h3 id="BoardModalTitle">New Announcement</h3> <button class="ui-btn-close" id="BoardModalClose"> <svg width="20" height="20"> <use xlink:href="#icon-close" /> </svg> </button> </div> <div id="BoardModalViewBody" style="display:flex; flex:1; flex-direction:column;"></div> <div id="BoardModalEditBody" style="display:flex; flex:1; flex-direction:column;"> <div class="MapPost-modal-body"> <div class="MapPost-form-group"> <label for="BoardFormTitle">Title <small id="BoardTitleCounter" style="float: right;">0/100</small></label> <input type="text" id="BoardFormTitle" placeholder="Enter title..."> </div> <div class="MapPost-form-group"> <label for="BoardFormContent">Content<small id="BoardContentCounter" style="float: right;">0/2000</small></label> <textarea id="BoardFormContent" placeholder="Enter details..."></textarea> </div> </div> <div class="MapPost-modal-footer"> <div class="reply-btn-wrapper"> <button class="reply-btn-submit" id="BoardBtnTest" style="display: none;">Send Test to Self</button> <button class="reply-btn-submit" id="BoardBtnSubmit">Submit</button> <button class="reply-btn-cancel" id="BoardBtnCancel">Cancel</button> </div> </div> </div> </div> </div> <br> <br> <br> <script type="module" src="https://smokelyze.org/js/fb-announcements.js"></script> https://smokelyze.org/resrc/data/ Mon, 01 Jan 0001 00:00:00 +0000 https://smokelyze.org/resrc/data/ <link rel="stylesheet" href="https://smokelyze.org/css/data.css"> <link rel="stylesheet" href="https://smokelyze.org/css/map.css"> <!-- Loading Spinner (shared with loader-ui.js toggleSpinner) --> <div id="MapLoadingOverlay"> <div id="MapLoadingSpinner"></div> <div id="MapLoadingText"></div> </div> <h1 style="text-align: center;"> Data Archive </h1> <div class="datadb-tabs"> <button class="datadb-tab-btn active" onclick="openTab(event, 'published')">Published data</button> <button class="datadb-tab-btn" onclick="openTab(event, 'annual')">Latest Analysis & Prediction</button> </div> <div id="published" class="datadb-tab-content active"> <h3>UW GAM-v2 (Lee and Jaffe, 2025)</h3> <ul> <li> <b style="font-weight: bold; color: var(--card-shadow);">[Full dataset]</b>: University of Washington ResearchWorks Archive, <a href="https://hdl.handle.net/1773/52893" target="_blank" rel="noopener noreferrer">https://hdl.handle.net/1773/52893</a> </li> <li> <b style="font-weight: bold; color: var(--card-shadow);">[Citation]</b>: Lee, H. and Jaffe, D. A.: Impact of Wildfires on O3 and Air Quality Across the United States for 2019–2024 Using Generalized Additive Models, <em>J. Geophys. Res.: Atmos.</em>, 130, e2025JD044088, 2025. <a href="https://doi.org/10.1029/2025JD044088" target="_blank" rel="noopener noreferrer">https://doi.org/10.1029/2025JD044088</a> </li> </ul> <h3>UW GAM-v1 (Lee and Jaffe, 2024)</h3> <ul> <li> <b style="font-weight: bold; color: var(--card-shadow);">[Full dataset]</b>: University of Washington ResearchWorks Archive, <a href="http://hdl.handle.net/1773/51276" target="_blank" rel="noopener noreferrer">http://hdl.handle.net/1773/51276</a> </li> <li> <b style="font-weight: bold; color: var(--card-shadow);">[Citation]</b>: Lee, H. and Jaffe, D. A.: Wildfire impacts on O3 in the continental United States using PM2.5 and a generalized additive model (2018–2023), <em>Environ. Sci. Technol.</em>, 58, 14764–14774, 2024. <a href="https://doi.org/10.1021/acs.est.4c05870" target="_blank" rel="noopener noreferrer">https://doi.org/10.1021/acs.est.4c05870</a> </li> </ul> <h3>UW Smoke PM2.5 (Jaffe et al., 2026)</h3> <ul> <li> <b style="font-weight: bold; color: var(--card-shadow);">[Full dataset]</b>: University of Washington ResearchWorks Archive, <a href="https://hdl.handle.net/1773/53059" target="_blank" rel="noopener noreferrer">https://hdl.handle.net/1773/53059</a> </li> <li> <b style="font-weight: bold; color: var(--card-shadow);">[Citation]</b>: Jaffe, D., Lee, H., Magzamen, S., Goldberg, D., and O'Dell, K.: Health and Regulatory Impacts of PM2.5 from Wildland Fires for 2019–2024 in the U.S., <em>GeoHealth</em>, Under review, 2026. </li> </ul> <h3>EPA EMBER (Simon et al., 2024)</h3> <ul> <li> <b style="font-weight: bold; color: var(--card-shadow);">[Full dataset]</b>: Zenodo, <a href="https://zenodo.org/records/13737754" target="_blank" rel="noopener noreferrer">https://zenodo.org/records/13737754</a> </li> <li> <b style="font-weight: bold; color: var(--card-shadow);">[Citation]</b>: Simon, H. Beidler, J., Baker, K. R., Henderson, B. H., Fox, L., Misenis, C., Campbell, P., Vukovich, J., Possiel, N., and Eyth, A.: Expediated modeling of burn events results (EMBER): A screening-level dataset of 2023 ozone fire impacts in the US, <em>Data in Brief</em>, 58, 111208, 2024. <a href="https://doi.org/10.1016/j.dib.2024.111208" target="_blank" rel="noopener noreferrer">https://doi.org/10.1016/j.dib.2024.111208</a> </li> </ul> <div class="published-sub-tabs-container"> <div class="datadb-tabs"> <button class="datadb-tab-btn active" onclick="openSubTab(event, 'DatadbByQuerySection')">AQS query</button> <button class="datadb-tab-btn" onclick="openSubTab(event, 'DatadbStateReportSection')">State report</button> </div> <!-- AQS query Sub-tab --> <div id="DatadbByQuerySection" class="datadb-tab-content sub-tab-content active"> <div class="card-about reveal-on-scroll"> <!-- Config --> <div class="datadb-query-form" style="align-items: flex-end;"> <div class="datadb-form-group"> <label for="DatadbDataSource">Dataset</label> <select id="DatadbDataSource"> <option value="gam-v2">UW GAM-v2 (Lee and Jaffe, 2025) </option> <option value="gam-v1">UW GAM-v1 (Lee and Jaffe, 2024) </option> <option value="pm-cbsa">UW Smoke PM2.5 (Jaffe et al., 2026) </option> <option value="epa-ember">EPA EMBER (Simon, et al., 2024) </option> </select> </div> <div class="datadb-form-group"> <label for="DatadbDataState">State</label> <select id="DatadbDataState"> <option value="">Select State</option> </select> </div> <div class="datadb-form-group"> <label for="DatadbDataAQS">AQS</label> <select id="DatadbDataAQS"> <option value="">Select AQS</option> </select> </div> </div> <br> <div class="datadb-query-form" style="display: flex; justify-content: flex-end;"> <button class="datadb-query-btn" id="DatadbDataTableBtnImport">Import data</button> </div> <!-- Query Content / Results --> <div id="DatadbDataTableWrapper" style="display: none;"> <hr> <div style="display: flex; justify-content: space-between; align-items: center; margin-bottom: 2rem;"> <h3 id="DatadbDataTableTitle" style="margin: 0;">Query Results</h3> </div> <p id="DatadbDataTableNotice" style="color: var(--card-shadow); font-size: 1.4rem; font-weight: bold;"> </p> https://smokelyze.org/resrc/documents/ Mon, 01 Jan 0001 00:00:00 +0000 https://smokelyze.org/resrc/documents/ <div class="doc-layout"> <!-- Left Sidebar --> <nav class="doc-sidebar" id="DocSidebar"> <div class="doc-sidebar-header"> <div class="doc-sidebar-title">Documents</div> <button class="ui-btn-close" id="DocSidebarClose"> <svg width="20" height="20"> <use xlink:href="#icon-close" /> </svg> </button> </div> <ul class="doc-toc" id="DocToc"> <li class="doc-sidebar-divider">App Information</li> <li class="doc-toc-h1 active" data-doc="doc-arch"><a href="#">Technical Stack</a></li> <li class="doc-toc-h1" data-doc="doc-mappost"><a href="#">MapPost</a></li> <li class="doc-sidebar-divider">Research Methodology</li> <li class="doc-toc-h1" data-doc="doc-pmcrit"><a href="#">PM2.5-criteria</a></li> <li class="doc-toc-h1" data-doc="doc-smokeday"><a href="#">Smoke Day</a></li> <li class="doc-toc-h1" data-doc="doc-gam"><a href="#">GAM</a></li> <li class="doc-toc-h1" data-doc="doc-smoke-impacts"><a href="#">Note on Statistics</a></li> <li class="doc-sidebar-divider">Data Pipeline</li> <li class="doc-toc-h1" data-doc="doc-wildfire-news"><a href="#">News</a></li> <li class="doc-toc-h1" data-doc="doc-wildfire-nifc"><a href="#">NIFC</a></li> <li class="doc-toc-h1" data-doc="doc-airnow"><a href="#">EPA/AirNow</a></li> <li class="doc-toc-h1" data-doc="doc-hms"><a href="#">NOAA/HMS</a></li> <li class="doc-toc-h1" data-doc="doc-merra2"><a href="#">NASA/MERRA-2</a></li> <li class="doc-toc-h1" data-doc="doc-tropomi"><a href="#">S5P/TROPOMI</a></li> <li class="doc-toc-h1" data-doc="doc-tempo"><a href="#">NASA/TEMPO</a></li> <li class="doc-toc-h1" data-doc="doc-hysplit"><a href="#">NOAA/HYSPLIT</a></li> <li class="doc-toc-h1" data-doc="doc-pred-gam-v2"><a href="#">UW GAM-v2 pred.</a></li> </ul> </nav> <!-- Mobile TOC toggle --> <button class="doc-toc-toggle" id="DocTocToggle" style="align-items: center; 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"block" : "none"; div.innerHTML = '<p class="doc-loading">Loading...</p> https://smokelyze.org/resrc/faq/ Mon, 01 Jan 0001 00:00:00 +0000 https://smokelyze.org/resrc/faq/ <h1 style="text-align: center;"> Frequently Asked Questions </h1> <div class="faq-hero"> <p> Everything you need to know about using Smokelyze <br> from data layers to analysis. </p> <div class="faq-search-wrap"> <input type="text" class="faq-search" id="FaqSearch" placeholder="Search questions..."> </div> <div class="faq-filters"> <button class="faq-filter-btn active" data-filter="all">All</button> <button class="faq-filter-btn" data-filter="data">Data & Layers</button> <button class="faq-filter-btn" data-filter="account">Account</button> <button class="faq-filter-btn" data-filter="general">General</button> <button class="faq-filter-btn" data-filter="ai">Ai</button> </div> <div class="faq-contact"> Can't find what you're looking for? <br> Contact the developer, PhD. Haebum Lee. </div> </div> <div class="faq-list" id="FaqList"> <!-- Data & Layers --> <div class="faq-item" data-category="data"> <div class="faq-question" onclick="this.parentElement.classList.toggle('open')"> <h3><span class="faq-tag">Data</span> What is the "SMO" (Smoke O3)?</h3> <span class="faq-icon">+</span> </div> <div class="faq-answer"> <div class="faq-answer-inner"> <strong>SMO (Smoke contribution to Ozone or Smoke O3)</strong> represents the estimated increase in the MDA8 O3 concentration caused by wildfire smoke. It is calculated from the GAM residual as: <br><br> <code>Residual = MDA8 O3 (observed) - MDA8 O3_pred (predicted)</code> <br><br> If it is a <strong>smoke day</strong>: <code>SMO = Residual</code> <br><br> While the residual is calculated for every day, the <strong>SMO is only reported on smoke days</strong>. <br><br> A positive SMO value means wildfire smoke likely <strong>increased ozone</strong> at that monitoring site on that day. Because any model analysis will have random variations, it is important to examine how the SMO on an individual day compares to the distribution of all non-smoke days. This is expressed as the <strong>quantile</strong>, which indicates where on the distribution the individual day falls. For example, an SMO value of 12 ppb with a 98th percentile quantile indicates the value is highly significant. See more discussion of statistics in the <a href="https://smokelyze.org/resrc/documents?doc=doc-smoke-impacts">statistics doc</a>. </div> </div> </div> <div class="faq-item" data-category="data"> <div class="faq-question" onclick="this.parentElement.classList.toggle('open')"> <h3><span class="faq-tag">Data</span> What does the "Published" data mean, and why do I need to log in?</h3> <span class="faq-icon">+</span> </div> <div class="faq-answer"> <div class="faq-answer-inner"> <strong>Published data</strong> refers to peer-reviewed scientific model outputs (GAM-v2, GAM-v1, EPA EMBER, Smoke PM2.5) that estimate smoke-attributed ozone and PM2.5 concentrations. These datasets require <strong>login with a free account</strong> because they are research-grade data products that we want to track usage for academic attribution purposes. Simply sign in with your Google account to access all Published layers. </div> </div> </div> <div class="faq-item" data-category="data"> <div class="faq-question" onclick="this.parentElement.classList.toggle('open')"> <h3><span class="faq-tag">Data</span> Why does the map say "No data found" for my selected date?</h3> <span class="faq-icon">+</span> </div> <div class="faq-answer"> <div class="faq-answer-inner"> Each dataset covers a specific time period. For example, the GAM-v2 model covers <strong>April–October of 2019–2024</strong> (ozone season only). If you select a date outside this range, no data will be available. Check the <strong>Layer Descriptions</strong> panel (the <code>ℹ</code> icon on the map) for the exact date range of each dataset. For HMS Smoke and Fire data, data from the <strong>current day</strong> may not yet be available due to processing delays — try selecting yesterday's date. </div> </div> </div> <div class="faq-item" data-category="data"> <div class="faq-question" onclick="this.parentElement.classList.toggle('open')"> <h3><span class="faq-tag">Data</span> How do I compare data across AQS sites?</h3> <span class="faq-icon">+</span> </div> <div class="faq-answer"> <div class="faq-answer-inner"> Use the <strong>statistical plots</strong> available in the [Map] page: <ul> <li><strong>Table:</strong> View regional or site-level summary statistics including area burned, smoke coverage, and fire metrics in a structured list.</li> <li><strong>Bar/Line plot:</strong> View state-level aggregated statistics and click individual states for site-level drill-down.</li> <li><strong>ParCoords plot:</strong> Multi-dimensional visualization to compare trends across different variables or sites simultaneously.</li> <li><strong>Scatter plot:</strong> Select multiple data layers and compare their values site-by-site. The first selected layer goes to the Y-axis, and additional layers become X-axis traces.</li> </ul> </div> </div> </div> <div class="faq-item" data-category="data"> <div class="faq-question" onclick="this.parentElement.classList.toggle('open')"> <h3><span class="faq-tag">Data</span> What is the "Latest Analysis & Prediction" in the Data Archive?</h3> <span class="faq-icon">+</span> </div> <div class="faq-answer"> <div class="faq-answer-inner"> The <strong>Latest Analysis & Prediction</strong> section (Resources > Data > Latest Analysis & Prediction) provides summarized research outputs for specific calendar years, categorized into <strong>Preliminary</strong> (initial models) and <strong>Finalized</strong> (validated results). <ul> <li><strong>UW GAM-v2 (+2025):</strong> Predictions for wildfire seasons (2025+) using the finalized model architecture, UW GAM-v2 (Lee and Jaffe, 2025). </li> <li><strong>UW Smoke PM2.5 (+2025):</strong> Summarized PM2.5, PM2.5-criteria, and Smoke day across PM2.5 AQS sites using UW Smoke PM2.5 (Jaffe et al., 2026) methodology. </li> </ul> Finalized reports are typically released in <strong>September of the following year</strong> (e.g., the 2025 finalized dataset is expected in Sep 2026). These reports use the final QC data reported to the EPA's Air Quality System (AQS). Like all Published data, you must be logged in to download these files. <br><br> <strong>Note on Preliminary data:</strong> Preliminary data combines the most recent EPA pre-generated data with AirNow observations, which are not considered final data. Users should exercise some caution when using preliminary outputs, although in practice, the preliminary data usually does not change significantly in the final dataset. Due to staggered reporting cycles and our goal to generate rapid analyses, we start our analysis with the preliminary dataset and switch to the final AQS dataset as soon as possible. Finalized data is established based on the EPA's official "as of" timestamp at the time of publication. Please use our analyses with awareness of these limitations. </div> </div> </div> <div class="faq-item" data-category="data"> <div class="faq-question" onclick="this.parentElement.classList.toggle('open')"> <h3><span class="faq-tag">Data</span> What is the "AQS query" in the Data Archive?</h3> <span class="faq-icon">+</span> </div> <div class="faq-answer"> <div class="faq-answer-inner"> The <strong>AQS query</strong> tool (located under Resources > Data > Published > AQS query) allows you to extract processed data at the individual AQS monitoring station level. <br><br> By selecting a <strong>Dataset</strong> (e.g., GAM-v2), <strong>State</strong>, and a specific <strong>AQS site</strong>, you can import historical model outputs and observations. Once data is imported, you can toggle between: <ul> <li><strong>Location:</strong> View the site's physical metadata and its position on a map.</li> <li><strong>Table:</strong> Browse the full dataset in a structured list and download it as a <strong>CSV</strong> for external analysis. </li> <li><strong>Plot:</strong> Generate interactive time-series charts to visualize trends over custom date ranges.</li> </ul> </div> </div> </div> <div class="faq-item" data-category="data"> <div class="faq-question" onclick="this.parentElement.classList.toggle('open')"> <h3><span class="faq-tag">Data</span> What is the "State report" in the Data Archive?</h3> <span class="faq-icon">+</span> </div> <div class="faq-answer"> <div class="faq-answer-inner"> The <strong>State report</strong> tool (Resources > Data > Published > State report) provides aggregated air quality summaries at the state level. It is designed to help you understand wildfire impacts in the state level <br><br> Key features include: <ul> <li><strong>Temporal Resolution:</strong> Choose between <strong>"By Year"</strong> for annual trends or <strong>"By Date"</strong> to analyze specific high-impact periods. </li> <li><strong>Report Types:</strong> Select from various statistics, such as average smoke-attributed ozone (SMO) levels, exceedance day counts, or site-specific summaries within the state.</li> <li><strong>Exportable Data:</strong> Like the AQS query tool, all generated reports can be reviewed in a table format and downloaded as a <strong>CSV</strong> file.</li> </ul> </div> </div> </div> <!-- Account --> <div class="faq-item" data-category="account"> <div class="faq-question" onclick="this.parentElement.classList.toggle('open')"> <h3><span class="faq-tag">Account</span> Why do I need to sign in with Google?</h3> <span class="faq-icon">+</span> </div> <div class="faq-answer"> <div class="faq-answer-inner"> Signing in is required for two reasons: <ul> <li><strong>Access control</strong>: Published research data is restricted to authenticated users for usage tracking and academic attribution.</li> <li><strong>Community features</strong>: MapPosts (community map pins) and Announcements require user identity to display authorship and enable moderation.</li> </ul> We use <strong>Google Sign-In exclusively</strong> — no separate username/password is created. We only access your display name, email, and profile photo; no other Google data is accessed. </div> </div> </div> <div class="faq-item" data-category="account"> <div class="faq-question" onclick="this.parentElement.classList.toggle('open')"> <h3><span class="faq-tag">Account</span> What is a "Guest" login?</h3> <span class="faq-icon">+</span> </div> <div class="faq-answer"> <div class="faq-answer-inner"> Guest mode gives you <strong>full access</strong> to all Live data layers (HMS Smoke, Hotspots, AirNow, Wildfire News, NIFC Fires) <strong>without signing in</strong>. However, you will not be able to access Published model data, write MapPosts, or view Announcements. If you only need real-time air quality monitoring, Guest mode is perfectly sufficient. </div> </div> </div> <div class="faq-item" data-category="account"> <div class="faq-question" onclick="this.parentElement.classList.toggle('open')"> <h3><span class="faq-tag">Account</span> What is the "UID" in my profile, and how do I use it?</h3> <span class="faq-icon">+</span> </div> <div class="faq-answer"> <div class="faq-answer-inner"> The <strong>UID (User ID)</strong> is your unique identifier within the Smokelyze platform. It is used to manage access permissions for collaboration features like <strong>MapPost</strong>. <br><br> For example, if you want to share a MapPost with specific colleagues rather than the entire public, you can set the post's visibility to <strong>"Group"</strong>. Only members you have added to your group via their UID will be able to see those posts. <br><br> <strong>How to set up a group:</strong> <ol> <li>Go to your <strong>Profile (User icon)</strong> > <strong>Settings</strong>.</li> <li>Enter your colleague's <strong>UID</strong> in the input field.</li> <li>Click <strong>"Add"</strong> to register them as a group member.</li> </ol> Once registered, they will be granted permission to view and interact with your "Group" visibility MapPosts. </div> </div> </div> <!-- General --> <div class="faq-item" data-category="general"> <div class="faq-question" onclick="this.parentElement.classList.toggle('open')"> <h3><span class="faq-tag">General</span> I noticed an update but the page hasn't changed. How do I fix this? </h3> <span class="faq-icon">+</span> </div> <div class="faq-answer"> <div class="faq-answer-inner"> Sometimes browsers store an old version of the site in their <strong>Cache</strong> to save loading time. If you encounter display issues or don't see the latest updates, you should perform a <strong>"Hard Refresh"</strong>: <ul> <li><strong>Windows/Linux:</strong> Press <code>Ctrl</code> + <code>Shift</code> + <code>R</code> (or <code>Ctrl</code> + <code>F5</code>)</li> <li><strong>Mac:</strong> Press <code>Cmd</code> + <code>Shift</code> + <code>R</code></li> </ul> This forces the browser to discard the cached files and download the most recent version of the platform. If issues persist, you may need to clear your browser's <strong>Cache and Cookies</strong> (Shortcut: <code>Ctrl</code> + <code>Shift</code> + <code>Del</code> on Windows/Linux, <code>Cmd</code> + <code>Shift</code> + <code>Del</code> on Mac). </div> </div> </div> <div class="faq-item" data-category="general"> <div class="faq-question" onclick="this.parentElement.classList.toggle('open')"> <h3><span class="faq-tag">General</span> Which browsers are supported?</h3> <span class="faq-icon">+</span> </div> <div class="faq-answer"> <div class="faq-answer-inner"> Smokelyze works best on modern browsers: <ul> <li>Edge, Chrome, Firefox, Safari, etc.</li> <li>Mobile browsers (e.g., Chrome for Android, Safari for iOS)</li> <li>Internet Explorer is not supported</li> </ul> For the best experience, use a <strong>desktop browser</strong> with a screen width of 1024px or wider. The map and statistical plots are fully responsive but designed for larger screens. <br><br> On some computers with integrated graphics (on Windows), we have found that [Chrome] has a problem in rendering the high resolution graphics from our app. If you see a problem while using [Chrome], we recommend switching to one of the other browsers. If issues persist, please contact us via the <a href="https://smokelyze.org/about/contact/">Contact</a> page. </div> </div> </div> <div class="faq-item" data-category="general"> <div class="faq-question" onclick="this.parentElement.classList.toggle('open')"> <h3><span class="faq-tag">General</span> The map screen is "black" or "grey". How can I fix this? </h3> <span class="faq-icon">+</span> </div> <div class="faq-answer"> <div class="faq-answer-inner"> These display issues are almost universally caused by <strong>Graphics Memory (GPU VRAM) Exhaustion</strong>. Our application renders massive amounts of geometric data directly in your browser. Here is how to prevent and fix memory crashes: <ul> <li><strong>Browser Limits:</strong> On certain Windows systems (especially with integrated graphics), Chrome may throttle GPU memory usage around 1GB to prevent system instability. If you encounter black screens, ensure Chrome is updated, or try <strong>Edge</strong>, which often handles hardware-specific rendering more efficiently on Windows.</li> <li><strong>Change Map Type (Switch to [Default] or [Light] Map):</strong> Dense background maps (like Vector or Topo) consume the majority of your graphics memory. If you experience crashes, immediately switch your <strong>Map Type</strong> (bottom left menu) to the <strong>Light</strong> map. The Light map is highly optimized and practically eliminates VRAM overflows.</li> <li><strong>Avoid Rapid Clicking:</strong> Clicking through multiple dates or layers extremely fast without waiting for the map to finish drawing can forcefully overload the Javascript Garbage Collector, triggering a Black Screen. Wait for the loading spinner to resolve before clicking the next day.</li> <li><strong>Hard Refresh:</strong> If your browser tab has already crashed into a Black or Grey screen, simply refreshing normally might not clear the GPU buffer. Perform a <strong>Hard Refresh</strong> (<code>Ctrl</code> + <code>Shift</code> + <code>R</code>) to completely reset the application memory.</li> </ul> </div> </div> </div> <div class="faq-item" data-category="general"> <div class="faq-question" onclick="this.parentElement.classList.toggle('open')"> <h3><span class="faq-tag">General</span> How do I cite Smokelyze in my research?</h3> <span class="faq-icon">+</span> </div> <div class="faq-answer"> <div class="faq-answer-inner"> Each dataset has its own specific research paper for citation. Please cite the relevant paper based on the data you used: <ul> <li><strong>GAM-v2 (Smoke O3):</strong> <a href="https://doi.org/10.1029/2025JD044088" target="_blank">Lee and Jaffe, 2025 (JGR-Atmos)</a></li> <li><strong>GAM-v1 (Smoke O3):</strong> <a href="https://doi.org/10.1021/acs.est.4c05870" target="_blank">Lee and Jaffe, 2024 (ES&T)</a></li> <li><strong>Smoke PM2.5:</strong> Jaffe et al., 2026 (GeoHealth) (Forthcoming; currently in minor revisions) </li> </ul> If you wish to cite the <strong>Smokelyze app itself</strong>, please cite the <strong>Lee and Jaffe (2025) (GAM-v2)</strong> paper for results relating to <strong>Smoke O3</strong>, or the <strong>Jaffe et al. (2026)</strong> paper for results relating to <strong>Smoke PM2.5</strong>, as the current platform's development is fundamentally linked to this research. <br><br> For full citation strings and DOI links, please visit the <strong><a href="https://smokelyze.org/resrc/data">Data Archive</a></strong> page. </div> </div> </div> <div class="faq-item" data-category="general"> <div class="faq-question" onclick="this.parentElement.classList.toggle('open')"> <h3><span class="faq-tag">General</span> What is the "Announcements" page?</h3> <span class="faq-icon">+</span> </div> <div class="faq-answer"> <div class="faq-answer-inner"> The <strong>Announcements</strong> page is where we post project updates, new layer releases, system maintenance notices, and key research milestones. Check this page regularly to stay informed about the latest developments in the Smokelyze platform. </div> </div> </div> <div class="faq-item" data-category="general"> <div class="faq-question" onclick="this.parentElement.classList.toggle('open')"> <h3><span class="faq-tag">General</span> What is the "Links" page?</h3> <span class="faq-icon">+</span> </div> <div class="faq-answer"> <div class="faq-answer-inner"> The <strong>Links</strong> page is a curated collection of useful external resources, including official air quality monitoring sites, wildfire tracking tools, and academic partner organizations. </div> </div> </div> <!-- Ai Chat --> <div class="faq-item" data-category="ai"> <div class="faq-question" onclick="this.parentElement.classList.toggle('open')"> <h3><span class="faq-tag">Ai</span> How do I set up the Ai Chat assistant?</h3> <span class="faq-icon">+</span> </div> <div class="faq-answer"> <div class="faq-answer-inner"> The AI assistant requires a <strong>Google Gemini API Key</strong> (free tier available): <ul> <li>1. Visit <a href="https://aistudio.google.com/apikey" target="_blank">Google AI Studio</a> and generate your API key.</li> <li>2. In Smokelyze, click on your <strong>Profile icon</strong> → <strong>Settings</strong> → paste your key into the <strong>Google Gemini API</strong> field.</li> <li>3. Open the Ai Chat panel from the map page and start asking questions!</li> <li><strong>Important Notes on Tiers & Pricing:</strong> <ul> <li><strong>Free Tier</strong>: You can use the Gemini API for free. However, please refer to the <a href="https://aistudio.google.com/app/rate-limit" target="_blank">Gemini API Rate Limits</a> as the free tier has specific quotas for requests per minute and per day.</li> <li><strong>Paid Tier (Optional)</strong>: If you require higher usage limits or unrestricted access, you can manually switch to a <strong>Paid Tier</strong> by setting up a billing account directly within your Google AI Studio/Cloud project (Check <a href="https://ai.google.dev/pricing" target="_blank">detailed pricing here</a>).</li> <li><strong>Model Version</strong>: The assistant currently utilizes <strong>Gemini 3.1-flash-lite</strong>. We prioritize models that offer the highest free-tier quotas and most cost-effective performance; therefore, the model version may change at any time to ensure the best user experience.</li> </ul> </li> </ul> Your API key is stored <strong>only in your browser's local storage</strong> and is never saved on our servers. Any costs associated with a paid tier are billed <strong>directly to your Google Cloud account</strong>. </div> </div> </div> <div class="faq-item" data-category="ai"> <div class="faq-question" onclick="this.parentElement.classList.toggle('open')"> <h3><span class="faq-tag">Ai</span> What can the AI assistant do?</h3> <span class="faq-icon">+</span> </div> <div class="faq-answer"> <div class="faq-answer-inner"> The AI assistant is a <strong>full-stack map controller</strong> — not just a chatbot. It can: <ul> <li><strong>Navigate</strong>: Change dates, toggle layers, switch datasets, and fly to specific locations on the map (e.g., "Set the date to 2023-06-10 and show the HMS smoke layer").</li> <li><strong>Analyze</strong>: Run SQL queries against the entire historical database to find rankings, trends, and comparisons (e.g., "Which site in California had the highest SMO on 2023-07-15?").</li> </ul> </div> </div> </div> <div class="faq-item" data-category="ai"> <div class="faq-question" onclick="this.parentElement.classList.toggle('open')"> <h3><span class="faq-tag">Ai</span> Is my API key secure?</h3> <span class="faq-icon">+</span> </div> <div class="faq-answer"> <div class="faq-answer-inner"> Yes. Your API key follows a <strong>BYOK (Bring Your Own Key)</strong> model: <ul> <li>The key is stored in your browser's <code>localStorage</code> — it never leaves your device except when making API calls.</li> <li>When communicating with our backend, the key is sent via a <strong>secure HTTP header</strong> (not in the request body) to minimize logging exposure.</li> <li>Our server uses the key only to forward your request to Google's API, then discards it. We do not store, log, or cache your key.</li> </ul> </div> </div> </div> </div> <div class="faq-no-results" id="FaqNoResults"> No matching questions found. 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} .faq-item:nth-child(3) { animation-delay: 0.10s; } .faq-item:nth-child(4) { animation-delay: 0.14s; } .faq-item:nth-child(5) { animation-delay: 0.18s; } .faq-item:nth-child(6) { animation-delay: 0.22s; } .faq-item:nth-child(7) { animation-delay: 0.26s; } .faq-item:nth-child(8) { animation-delay: 0.30s; } .faq-item:nth-child(9) { animation-delay: 0.34s; } .faq-item:nth-child(10) { animation-delay: 0.38s; } .faq-item:nth-child(11) { animation-delay: 0.42s; } .faq-item:nth-child(12) { animation-delay: 0.46s; } /* Contact CTA */ .faq-contact { text-align: center; color: var(--text-muted); font-size: 1.5rem; } .faq-contact a { color: var(--accent-link); font-weight: bold; } @media (max-width: 1024px) { .faq-hero h1 { font-size: 2.8rem; } .faq-question { padding: 1.4rem 1.4rem; } .faq-answer-inner { padding: 0 1.4rem 1.6rem; } .faq-list { padding: 0 1rem 4rem; } } </style> https://smokelyze.org/resrc/gam-manual/ Mon, 01 Jan 0001 00:00:00 +0000 https://smokelyze.org/resrc/gam-manual/ <link rel="stylesheet" href="https://smokelyze.org/css/board.css"> <link rel="stylesheet" href="https://smokelyze.org/css/map.css"> <link rel="stylesheet" href="https://smokelyze.org/css/data.css"> <h1 style="text-align: center;"> Run your own GAMs </h1> <p style="text-align: center;"> Professional interface for Generalized Additive Models. Build, configure, and execute R-based statistical models in real-time. </p> <div class="gm-wrapper article-content"> <div class="gm-container"> <!-- [STEP 1] DATA INITIALIZATION --> <h2>Step 1: Import Data </h2> <div class="gm-card gm-card-flat"> <div class="gm-head-strip"> Select Source Dataset </div> <div class="gm-pad-lg"> <div class="gm-flex-end"> <div class="gm-input-group"> <select id="gamDataset" class="gm-input"> <option value="browser_upload">Load the data from your browser...</option> <option value="sample_aqs_490353006">Sample: AQS-490353006 (Hawthorne, Utah)</option> <option value="sample_aqs_230031100">Sample: AQS-230031100 (MICMAC HEALTHMaine)</option> </select> </div> <input type="file" id="InputUserFile" accept=".csv" style="display:none;"> <button id="BtnLoadData" class="gm-btn">Load data</button> </div> </div> </div> <!-- Data Warning & Preview --> <div id="DataLimitWarning" class="gm-warning-box"> This tool supports simple GAM simulations only. For large datasets (> 3000 rows), please perform the analysis directly in R. </div> <div id="DataPreviewContainer" class="gm-data-preview-container"> <table id="DataPreviewTable" class="gm-data-preview-table"> <thead id="DataPreviewHead"></thead> <tbody id="DataPreviewBody"></tbody> </table> </div> <!-- Pagination matching AQS query table footer --> <div id="DataPagination" class="gm-data-pagination"> <button id="BtnPrevData" class="gm-page-btn">Previous</button> <span id="DataPageInfo" class="gm-page-info">Page 1 of 1</span> <button id="BtnNextData" class="gm-page-btn">Next</button> </div> <br> <div id="MainSetupArea" class="gm-hidden gm-container"> <h2>Step 2: GAM Building Pipeline</h2> <!-- [Step 3 Instructions from user request] --> <div class="gm-note"> <h3 style="margin-bottom: 1rem;"> Quick Guide: </h3> <p style="margin-bottom: 1rem;">For those familiar with <code>mgcv</code> GAM, you can configure the model settings as follows:</p> https://smokelyze.org/resrc/links/ Mon, 01 Jan 0001 00:00:00 +0000 https://smokelyze.org/resrc/links/ <h1 style="text-align: center;"> Links </h1> <div class="card-about reveal-on-scroll"> <h2>For useful data archives </h2> <ul> <li> <a href="https://www.star.nesdis.noaa.gov/smcd/spb/aq/AerosolWatch/" target="_blank" rel="noopener noreferrer">AerosolWatch:</a> Aerosol-related satellite data mapping by NOAA NESDIS STAR: Center for Satellite Applications and Research </li> <li> <a href="https://www.airnowtech.org/index.cfm" target="_blank" rel="noopener noreferrer">AirNow-Tech:</a> A platform for analyzing real-time and historical air quality data from the US monitoring network </li> <li> <a href="https://files.airnowtech.org/" target="_blank" rel="noopener noreferrer">AirNow-Tech archive:</a> A repository for real-time and historical air quality data from the US monitoring network </li> <li> <a href="https://atmosphere.copernicus.eu/" target="_blank" rel="noopener noreferrer">Copernicus CAMS:</a> Provides global atmospheric composition data, forecasts, and reanalysis from the Copernicus Atmosphere Monitoring Service (CAMS) </li> <li> <a href="https://scihub.copernicus.eu/" target="_blank" rel="noopener noreferrer">Copernicus Hub:</a> A portal for accessing satellite imagery and Earth observation data from the Copernicus program </li> <li> <a href="https://aqs.epa.gov/aqsweb/documents/data_api.html" target="_blank" rel="noopener noreferrer">EPA AQS API:</a> API intructions for retrieving air quality data collected by the US Environmental Protection Agency (EPA) </li> <li> <a href="https://aqs.epa.gov/aqsweb/airdata/download_files.html" target="_blank" rel="noopener noreferrer">EPA AQS pre-generated data:</a> A collection of pre-processed air quality datasets available for bulk download </li> <li> <a href="https://www.epa.gov/air-quality-analysis/pm25-tiering-tool-exceptional-events-analysis" target="_blank" rel="noopener noreferrer">EPA PM2.5 tiering tool:</a> A tool for classifying PM2.5 air pollution events based on their severity and regulatory significance </li> <li> <a href="https://mesonet.agron.iastate.edu/ASOS/" target="_blank" rel="noopener noreferrer">IEM ASOS network:</a> Iowa Environmental Mesonet (IEM) Automated Surface Observing System (ASOS) Network, "riem" package in R </li> <li> <a href="https://disc.gsfc.nasa.gov/information/documents?title=Data%20Access" target="_blank" rel="noopener noreferrer">NASA GES DISC:</a> A data archive providing global climate, weather, and atmospheric datasets from NASA missions </li> <li> <a href="https://so2.gsfc.nasa.gov/no2/no2_index.html" target="_blank" rel="noopener noreferrer">NASA GSFC:</a> A resource for satellite-based NO2 data from NASA’s Goddard Space Flight Center </li> <li> <a href="https://giovanni.gsfc.nasa.gov/giovanni/" target="_blank" rel="noopener noreferrer">NASA Giovanni:</a> An online data analysis tool for visualizing and exploring NASA’s atmospheric and climate datasets </li> <li> <a href="https://goldsmr4.gesdisc.eosdis.nasa.gov/data/" target="_blank" rel="noopener noreferrer">NASA MERRA-2 archive:</a> A respitory for Modern-Era Retrospective analysis for Research and Applications, Version 2 (MERRA-2) </li> <li> <a href="https://power.larc.nasa.gov/" target="_blank" rel="noopener noreferrer">NASA POWER:</a> A website for NASA Prediction Of Worldwide Energy Resources (POWER) project </li> <li> <a href="https://www.goes-r.gov/products/baseline-aerosol-opt-depth.html" target="_blank" rel="noopener noreferrer">NOAA GOES-R:</a> A website for NOAA Geostationary Operational Environmental Satellites—R Series (GOES-R) </li> <li> <a href="https://console.cloud.google.com/storage/browser/gcp-public-data-goes-16;tab=objects?pageState=(%22StorageObjectListTable%22:(%22f%22:%22%255B%255D%22))&pli=1&prefix=&forceOnObjectsSortingFiltering=false" target="_blank" rel="noopener noreferrer">NOAA GOES-R GG cloud:</a> A Googel Cloud for NOAA Geostationary Operational Environmental Satellites—R Series (GOES-R) </li> <li> <a href="https://www.goes-r.gov/products/baseline-aerosol-opt-depth.html" target="_blank" rel="noopener noreferrer">NOAA GOES-R AOD:</a> A respitory for NOAA GOES-R Series Advanced Baseline Imager (ABI) Level-2 Aerosol Optical Depth (AOD) </li> <li> <a href="https://registry.opendata.aws/noaa-hrrr-pds/" target="_blank" rel="noopener noreferrer">NOAA HRRR:</a> A website for NOAA High-Resolution Rapid Refresh (HRRR) Model </li> <li> <a href="https://www.nco.ncep.noaa.gov/pmb/products/hrrr/hrrr.t00z.wrfsfcf00.grib2.shtml" target="_blank" rel="noopener noreferrer">NOAA HRRR parameters:</a> Parameter descriptions for NOAA High-Resolution Rapid Refresh (HRRR) Model </li> <li> <a href="https://www.temis.nl/index.php" target="_blank" rel="noopener noreferrer">TEMIS:</a> Tropospheric Emission Monitoring Internet Service (TEMIS) </li> <li> <a href="https://tempo.si.edu/" target="_blank" rel="noopener noreferrer">TEMPO:</a> Tropospheric Emissions Monitoring of Pollution (TEMPO) </li> <li> <a href="https://projects.cosmicds.cfa.harvard.edu/tempo-lite/" target="_blank" rel="noopener noreferrer">TEMPO CosmicDS :</a> Tropospheric Emissions Monitoring of Pollution (TEMPO) CosmicDS NO2 viewer </li> <li> <a href="https://www.epa.gov/hesc/remote-sensing-information-gateway" target="_blank" rel="noopener noreferrer">TEMPO EPA :</a> EPA’s Remote Sensing Information Gateway for TEMPO </li> <li> <a href="https://www.star.nesdis.noaa.gov/atmospheric-composition-training/python_tropomi_level2_download.php#download_files" target="_blank" rel="noopener noreferrer">TROPOMI-L2 NOAA:</a> Download TROPOMI Level-2 Data Files from the S5P Data Hub </li> <li> <a href="https://www.star.nesdis.noaa.gov/atmospheric-composition-training/python_tropomi_level2_download.php#download_files" target="_blank" rel="noopener noreferrer">TROPOMI-L2/3 PAL:</a> Copernicus Sentinel-5P Product Algorithm Laboratory (S5P-PAL) Data Portal (Level-2 and Level-3) </li> </ul> </div> <br> <div class="card-about reveal-on-scroll"> <h2>For spatial information </h2> <ul style="font-size: 1.6rem;"> <li> <a href="https://www.ncei.noaa.gov/access/monitoring/reference-maps/us-climate-regions" target="_blank" rel="noopener noreferrer">NOAA NCEI Geographical Reference Maps:</a> A website for NOAA NCEI Geographical Reference Maps </li> <li> <a href="https://catalog.data.gov/dataset/tiger-line-shapefile-current-nation-u-s-core-based-statistical-areas" target="_blank" rel="noopener noreferrer">US Census Bureau:</a> TIGER/Line Shapefile, Current, Nation, US, Core-Based Statistical Areas </li> <li> <a href="https://geodata.bts.gov/datasets/usdot::core-based-statistical-areas/explore?location=34.940269%2C-93.312937%2C4.54" target="_blank" rel="noopener noreferrer">USDOT BTS:</a> US Department of Transportation: ArcGIS Online, Core-Based Statistical Areas </li> </ul> </div> <br> <div class="card-about reveal-on-scroll"> <h2>For wildfire information </h2> <ul style="font-size: 1.6rem;"> <li> <a href="https://cwfis.cfs.nrcan.gc.ca/report/archives?year=2013&month=09&day=04&process=Submit" target="_blank" rel="noopener noreferrer">NRC:</a> A website for Natural Resources Canada (NRC) </li> <li> <a href="https://www.nifc.gov/fire-information/statistics/wildfires" target="_blank" rel="noopener noreferrer">NIFC:</a> A website for National Interagency Fire Center (NIFC) </li> <li> <a href="https://sciencenorthwest.com/cooking-up-pollution-a-study-on-how-gas-stoves-affect-indoor-air-pollution/" target="_blank" rel="noopener noreferrer">Science Northwest:</a> A blog on environmental science, air quality, and climate change (Dr. Jaffe, UW) </li> <li> <a href="https://wfeis.mtri.org/home" target="_blank" rel="noopener noreferrer">WFEIS:</a> Wildland Fire Emissions Inventory System (WFEIS) - assessments of historical wildland fire emissions across US, Canada, and global boreal regions </li> </ul> </div> <br> <div class="card-about reveal-on-scroll"> <h2>For models </h2> <ul style="font-size: 1.6rem;"> <li> <a href="https://www.epa.gov/scram/aermod-modeling-system-development" target="_blank" rel="noopener noreferrer">EPA AERMOD:</a> A Gaussian air dispersion model used for estimating air pollutant concentrations from industrial sources </li> <li> <a href="https://www2.acom.ucar.edu/facility/flexpart" target="_blank" rel="noopener noreferrer">FLEXPART:</a> FLEXible PARTicle dispersion model (FLEXPART) </li> <li> <a href="https://uataq.github.io/stilt/#/best-practices" target="_blank" rel="noopener noreferrer">STILT:</a> Stochastic Time-Inverted Lagrangian Transport Model v2.x (STILT) </li> </ul> </div> <br> <br> <br>